We stayed at Hotel Santo Tomas on Feb. 22nd, 2013. It was a great point to walk to the downtown area or relax in their pool and hot tub. Our second floor room was spacious, clean and had a very nice bath and tiled shower. The breakfast was tasty and filling with several options from which to choose. Thomas, the owner was present at breakfast and was very helpful answering questions about the area. They have a tour operations desk in their lobby to help set up day tours and travel. We didn't use their help, but wish we had as our week in other parts of the country progressed.
We really enjoyed our stay. It was like an oasis in the city. We parked our car in their guarded lot next door for $11 a day. Daytime walking around town was good. It is not advisable to walk anywhere in San Jose after the crowds thin out in the evening.
We recommend this hotel. If we return to San Jose we will stay there again.