We really enjoyed the Natural History Museum partly because it is in such a nice building and the interior and exterior architecture is incredible, but also because it's really well laid out and quite interactive. It was very easy to follow with a lot of the information being given in both German and English and there was so much to see and learn. We also went into the special exhibition that they have at the moment, which costs extra but if you're 18 or under it's free. It was called Bodies: the Exhibition and is all about the human body and has hundreds of body parts on display, really interesting but be warned that all of the things on display are real which we didn't realise until we asked at the end!
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